Thursday, January 5, 2012

Researcher Discusses Ohio Fracking, Earthquakes

Melissa Block interviews John Armbruster, a seismologist with Lamont-Doherty Earth Observatory, part of Columbia University, about why he believes the waste from fracking in Ohio has led to the earthquakes there. He says the injection of waste water from the fracking process created pressure on nearby faults, and he expects the quakes to continue ? even after the process is stopped.

Source: http://www.npr.org/2012/01/03/144633252/researcher-discusses-ohio-fracking-earthquakes?ft=1&f=1007

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New Guidelines Issued for Combining HIV, Seizure Meds (HealthDay)

WEDNESDAY, Jan. 4 (HealthDay News) -- Physicians need to take care when prescribing seizure medication to HIV/AIDS patients to prevent harmful interactions between drugs, experts warn.

The cautionary note from the American Academy of Neurology (AAN) has led to the issuance of a new AAN guideline, which was developed in consultation with the International League Against Epilepsy.

"It is important that patients know exactly which drugs they are taking and provide that information to all prescribing health care providers caring for them," lead guideline author Dr. Gretchen L. Birbeck, of Michigan State University, said in an AAN news release.

"Doctors may need to watch and adjust drug doses in people with HIV/AIDS who take seizure drugs," added Birbeck, who is also an AAN fellow.

Seizures and related disorders are not uncommon among HIV patients, according to Birbeck and colleagues. It is estimated that at least 10 percent of HIV patients experience seizures, they noted.

In the new guideline, published in the Jan. 4 online editions of both Neurology and Epilepsia, the research team cautioned that effectiveness of either set of drugs can be compromised when specific seizure medications are taken alongside certain HIV/AIDS treatments. Increased toxicity is another potential issue.

For example, levels of HIV/AIDS drugs can actually drop when they come into contact with certain seizure medications, such as phenytoin, phenobarbital and carbamazepine. The risk: an HIV drug regimen might fail, the authors pointed out.

One way Birbeck's team hopes to mitigate against such risk is to outline the correct dosages of seizure drugs. They noted that dangerous drug interactions may be avoidable if medications are prescribed in the right amounts.

The research team also said that the threat of harmful drug interactions is highest in places where drug choices are the most curtailed. That means that patients in poorer countries, where most HIV/AIDS patients now live, are particularly vulnerable.

"Future research should target epilepsy and HIV/AIDS drug combinations where choices are limited, such as in developing countries, to better understand the risk of these drug interactions," Birbeck said in the news release.

More information

For more on seizures, visit the Epilepsy Foundation.

Source: http://us.rd.yahoo.com/dailynews/rss/meds/*http%3A//news.yahoo.com/s/hsn/20120105/hl_hsn/newguidelinesissuedforcombininghivseizuremeds

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How to access Microsoft Windows files and folders from Linux


Dual-booting (a special case of multi-booting, running more than one operating system on the same computer) makes it possible to run Windows and Linux or other UNIX-like operating systems on the same computer. When set up and functioning correctly, it gives you the option to choose what OS to boot into.

Because of the nature of Linux, when you boot into the Linux half of a dual-boot system, you can access your data (files and folders) on the Windows side, without rebooting into Windows. And you can even edit those Windows files and save them back to the Windows half.

It is a very simple process, and requires very little work on your part. This brief tutorial shows you how it is done when dual-booting a distribution that uses the GNOME or KDE desktop environment.

The package that makes it possible to write to an NTFS (Windows) partition is called ntfs-3g. On most distributions, it is installed out of the box. If it is missing in the distribution that you are using, just use the distribution?s package manager to search for and install it.

If you are reading this from a distribution using KDE, the K Desktop Environment, open Dolphin, the file manager. The screen shot below shows what it should look like. The Places panel, the panel on the left side of Dolphin, is where your attention should be at this point. Aside from the folders on the Linux side, all the partitions and hard drives known to the system should be listed in the Places panel. For the partitions, their sizes are shown. If you know the size of the Windows partition, simply click on it to open it in place.
Windows Partition Linux KDE

You will know that you clicked on a Windows partition if you see the folders with names just like the one shown in this image. To access the data in your home folder, any one of the two folders circled should be the focus of your attention. Click on either one.
Windows Files KDE File Manager

You should see a bunch folders and some files, with some of the folders bearing the login or usernames of the user accounts. Find the one that matches your login name and click on it.
Windows Files Dolphin File Manager

That should open the window to all files and folders that you own. You probably want to first look in ?My Documents? folder.
Windows Files KDE Dolphin

If you are reading this from a distribution that uses the GNOME 2 or 3 desktop environment, the process of accessing the files and folders on the Windows side is no different from the KDE example. Just start Nautilus, the file manager. The rest of this portion requires no further explanation as they are the same as the KDE example.
Access Windows Files GNOME Linux

Windows Files From Linux GNOME

Linux Windows file Sharing

Windows Files Linux GNOME File Manager

To have articles like this delivered automatically to your Feed Reader or Inbox, subscribe via RSS or email. For simple comments, use the commenting system, but for more involved assistance, please use the Question & Answer section.

Source: http://lxer.com/module/newswire/ext_link.php?rid=160369

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Wednesday, January 4, 2012

Weekly Mod: How to replace a battery in an iPhone 3G, iPhone 3GS

Replacing the battery in your iPhone 3G or iPhone 3GS is a moderate level DIY repair. If you've got the right tools and parts, it shouldn't be too difficult to swap out that old battery for a brand new one on your own. It'll take a little bit of patience and about 30 minutes of your time.


Source: http://feedproxy.google.com/~r/TheIphoneBlog/~3/Mr33AeglfCE/story01.htm

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'7-inch ASUS EeePad' image appears, rumored for CES unveiling

Android Central

ASUS has seen considerable success with its 10-inch EeePad Transformer line, and now the Taiwanese manufacturer could be set to move into the 7-inch tablet space, if a newly-leaked promotional image is any indication. The shot, obtained by Italian site Notebook Italia, shows what seems to be a smaller Android-powered ASUS tablet with a slightly different design to earlier EeePad models. Most notably, the presence of docking connectors at the bottom suggests the possibility of a portrait-orientation keyboard dock, if such an add-on is offered. No firm information is available about specs for the mysterious device, however the possibility of  the Transformer Prime's beastly Tegra 3 chip powering this thing already has us salivating.

The source also suggests that ASUS' rumored 7-incher will make its debut at CES 2012 in Las Vegas, which should come as little surprise considering it's barely a week away at this point.

Source: Notebook Italia (Italian)



Source: http://feedproxy.google.com/~r/androidcentral/~3/KqVlReyufgc/story01.htm

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Tuesday, January 3, 2012

Chinese officials blamed for bullet train wreck

In a long-anticipated report by the Chinese government, sloppy management and design flaws caused a bullet train to crash in July 2011, in which 40 people were killed and a public outcry was sparked over the dangers of the country?s modern transportation system.

There were 54 officials deemed responsible for the accident, including a former railway minister. Several officials were discharged from Communist Party positions, but possible criminal punishments were not discussed.

The accident investigation was much anticipated. The crash, which happened near the southern town of Wenzhou, caused 177 injuries and 40 deaths, sparking criticism over the high perils and cost of bullet trains, an impressive project once enjoying the same prestige as China?s space program.

The report was required under regulations to be released by 20 November. However, when that date had already passed, Communist Party offered limited explanation, triggering further criticism from the state media, which had been abnormally skeptical about investigation and the handling of disaster.

The Cabinet report cited safety risks and design flaws, included a series of errors in management and equipment procurement. The government also criticized the rescue efforts conducted by the Railways Ministry.

The official statement confirmed earlier government reports that a lightning bolt had caused one train to stop, which was followed by sensor failures and blunders made by train controllers. This allowed a second train to continue moving on the same rail and eventually crash into it.

One of people singled out as responsible was Liu Zhijun, an ex Minister of Railways, who had worked as a bullet train booster and had already been incarcerated in February during a graft investigation. Also blamed was the chief manager of the firm which manufactured the signal, who passed away from a heart attack during the August investigations.

The resolution to blame one person who had already been jailed and another figure who was dead, along with various mid-level chiefs who have already been fired, suggests that further political repercussions will be limited.

Various officials were discharged from their Communist Party posts, including an ex secretary of the Shanghai Railway Bureau, which is a grave penalty likely to terminate any career advancement. Other figures received official rebukes, but there were no talks of potential criminal charges.

Based on Japanese and German systems, the bullet train is one factor of far-reaching federal technology goals that require the development of a Chinese mobile phone standard, a civilian jetliner, and progress in areas from genetics to nuclear power.

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Source: http://c.moreover.com/click/here.pl?r5690780762

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Your Appendix Could Save Your Life

Your appendix may save your life?that is, if you have one.? If you don?t, well, I will get to that. First I want to tell you about a guy I know, Bill Parker

Bill Parker grew up in Arkansas and is, by my precise calculation, fifty percent pure backwoods Arkansan and fifty percent intellectual wild man. Throw a little seminary training on top and you have a decent measure of the guy?complicated, interested, clever and unbounded. You are as likely to encounter him out on the streets of Durham trying to catch a rat as you are in his lab at the Duke University School of Medicine. He is one of a kind.? If you want to keep an eye on someone who is likely to come up with an idea that will change things, I?d keep an eye on Bill Parker. He is also, for the record, the guy to keep an eye on if you want to know how to catch a rat.

In the last five years, Parker, who is a professor of surgery, has published important papers on how proteins fold1, details of the challenges of getting a lung from a pig into a person2, and the function of the most common antibody in our guts (IgA)3. His interests and ideas are unusually catholic. They include the question of what the appendix does.

Bill Parker. Note the slight smirk indicating an idea might be brewing.

You may have heard the appendix is vestigial, a relict of our past like the hind leg bones of a whale. Parker heard that too, he just disagrees. Parker thinks the appendix serves as a nature reserve for beneficial bacteria in our guts. When we get a severe gut infection such as cholera (which happened often during much of our history and happens often in many regions even today), the beneficial bacteria in our gut are depleted. The appendix allows them to be restored.? In essence, Parker sees the appendix as a sanctuary for our tiny mutualist friends, a place where there is always room at the inn4. If he is right, the appendix nurtures beneficial bacteria even as our conscious brains and cultures tell us to kill, kill, kill them with wipes and pills.

Cholera cases by region. The size of a region shows the proportion of all cholera cases found in that region in 2004 (or in some cases slightly earlier, where data were not available).

Parker?s hypothesis is a fundamentally new idea about how an organ in our bodies ? let me repeat that, an organ in our bodies ? works. It is an idea Parker developed on the basis of sitting and thinking. At least initially, he did not have new data, experiments or models. The idea just came to him one day when he was on a stool in his lab with his buddy and collaborator Randall Bollinger. For all these reasons, I wrote about his idea at length in my book, The Wild Life of Our Bodies. I was not sure at the time whether Parker was right, but I knew that he and his ideas were interesting. No one else, for the record, had any better ideas.

At the time I wrote The Wild Life of Our Bodies, Parker and his colleague Randall Bollinger had offered up the mutualist-appendix hypothesis to the world but no one had tested any of its predictions. No one had criticized it. In some ways, no one except an excitable science writer here and there had taken enough notice to respond. There are more details ? a bit of drama and a few other characters?but, until recently, no more resolution.? Then, in December of 2011, a new study published in the journal Clinical Gastroenterology and Hepatology reported to have tested Parker?s idea head on. When I heard about the study, I will admit to feeling a little nervous, perhaps on Parker?s behalf, but also because I liked his idea.

In my mind, whether or not Parker?s idea held up to this new study, it was still an elegant idea, an idea that tied the human body to trees producing food for ants that protect them, fruits for animals that disperse them, and root chemicals that attract the fungi that help them find food. But the idea needed to be tested. It was plausible, given what we know and yet maybe it is just too radical this late in the story of the study of the human body to posit a totally new explanation for an organ?s existence.

Pseudomyrmex spinicola ants feeding on Beltian bodies produced by an Acacia tree. In exchange for this food, the ants defend, sometimes ferociously other times a little more lackadaisically (we all have our days), their host tree, much as, Parker imagines, the bacteria in the appendix defend their host from species like the Cholera pathogen, Vibrio cholerae.

Parker?s?idea, his hypothesis, predicts individuals with their appendix should be more likely to recover from severe gut infections than those without. To test this prediction, one could compare the fate of individuals with and without their appendixes after being experimentally infected with a gut pathogen. Easier said than done. Not even college students will voluntarily sign up for a dose of cholera, and lab rats, those time honored guinea pigs5 who never object to being poked, do not have an appendix.

There was one way forward? Scientists could compare the fates of individuals who suffer gut infections and have an appendix to those of individuals who suffer the same gut infections and do not have an appendix. They could, in other words, take advantage of the natural, albeit terrible, experiment created by the spread of human disease. The trouble was such a study would be easiest in developing countries where Cholera and other similar diseases are prevalent, but those are the same regions where medical records (of appendectomies, for example) tend to be the worst.

James Grendell, chief of the division of Gastroenterology, Hepatology and Nutrition, at Winthrop University-Hospital, solved the problem, along with his colleagues6. They studied a pathogen, Clostridium difficile, common even in places with good medical systems, even, it so happened, at Winthrop University-Hospital. Clostridium difficile, or ?C. diff.? as it is known among the hip medical in crowd, is a deadly pathogen often encountered in hospitals, particularly when patients must be treated by prolonged courses of antibiotics. C. diff. does not appear to compete well with the native biota of patients? guts, but when the native biota is depleted (as is the case after several courses of antibiotics) C. diff. can grow quickly and take over. It is the hare to the good bacteria?s tortoise, a weed in the plowed field. C. diff is most dangerous when, after treatment, it recurs, which is to say when the native fauna of the gut and immune system cannot, together, prevent it from reinvading. If Parker?s idea is right, individuals without an appendix should be more likely to have a recurrence of C. diff than those individuals with an appendix.

James Grendell and his team were able to find 254 patients at Winthrop-University Hospital who met the requirements of their study. Each needed to be older than 18 with evidence of having been infected by C. difficile. The team then focused on the subset of patients for whom the presence/absence of an appendix was known or discernible. The rest was easy. They compared whether individuals without their appendix were at a higher risk of recurrence from C. diff and whether the risk of recurrence varied as a function of whether patients were younger or older than sixty (it was thought to).

Even if the study found no effect of an appendix on C. diff recurrence, it would not necessarily reject Parker?s idea completely. Maybe James Grendell and collaborators failed to consider enough samples. Maybe the effect of an appendix is more subtle than the study was able to consider, i.e. it affects the extent of recurrence and not its presence or absence. Or maybe C. diff is just different from the pathogens such as cholera that (may have) shaped the evolution of our guts.

When Grendell looked at the results, two things became clear. First, patients older than sixty were more likely to have recurrences of C. diff, independent of any other factors. Maybe gut bacterial communities age too and make older guts easier to colonize. Maybe something else. And then, second, the big result?. Individuals without an appendix were four times more likely to have a recurrence of Clostridium difficile, exactly as Parker?s hypothesis predicted. Recurrence in individuals with their appendix intact occurred in 11% of cases. Recurrence in individuals without their appendix occurred in 48% of cases.

Grendell?s results do not prove Parker is right. Science does not work that way. More tests, even true experiments, need to be done. Maybe there was something else that differed between individuals with and without their appendixes. Maybe the result only applies to the mostly white population Winthrop hospital serves. Maybe the immune system plays a more important or different role than Parker envisions. These ?maybes? are part of what make science beautiful ? the idea that each question, each test, and each day, lead to more questions. Every good question is a road that goes on forever, diverging and bounding forward, sometimes quickly, other times more slowly, as new paths emerge and some of the old ones run straight into brick walls.

Where does this leave us? In your body is an organ that appears to be/may be/could be helping out the bacteria in your life so they can, in turn, help keep you alive. If you do not have your appendix anymore, you may be at an increased risk of recurrence and even death when confronted with a pathogen like C. diff., cholera or any of a wild kingdom of other pathogens. This possibility raises the question of what to do if your appendix (or your child?s appendix) becomes inflamed. For now, the answer is, at best, unclear. While appendicitis can be deadly, recent studies suggest some cases of appendicitis can be resolved using antibiotics, though the topic is an active area of research and little is known about the prognosis for individuals treated with antibiotics for appendicitis later in life7. Might there, some day, be solutions other than surgery and antibiotics, solutions that aim at restoring the sanctuary of the appendix? Maybe. Until then, doctors keep cutting infected appendixes out. When they do, when they hold them up, they hold up a symbol ? a somewhat gross, pinky-finger-sized symbol ?both of our complex relationship with other species and of how little we know.

Acute Appendicitis.

As for Bill Parker, he continues down his road. You can read more about his story in The Wild Life of Our Bodies, but only up to a point, because, like all stories, Parker?s has moved on. He has gone back to catching wild rats. With the approval of Duke University, he has even built a special house for them. He has a new idea, a big idea, an idea he doesn?t want me to share with the public just yet. I will give a hint though. The idea requires him to catch more wild rats. He thinks they hold secrets lost on domestic rats and humans,8 secrets that might help to explain autism, asthma and, knowing Bill, a fair bit more. And so he hammers on the cage and when everyone else goes to sleep he puts out dog food to bait his traps that they might yield his quarry, whether that is the rats or just more of the ideas that flash like lightning across the grasslands of his fertile mind.

1-Chen E, Everett ML, Holzknecht ZE, Holzknecht RA, Lin SS, Bowles DE, Parker W. Short-lived alpha-helical intermediates in the folding of beta-sheet proteins. ?Biochemistry. ?2010 Jul 6;49(26):5609-19.

2-Gaca JG, Lesher A, Aksoy O, Gonzalez-Stawinski GV, Platt JL, Lawson JH, Parker W, Davis RD. Disseminated intravascular coagulation in association with pig-to-primate pulmonary xenotransplantation. Transplantation. 2002 Jun 15;73(11):1717-23

3-Bollinger RR, Everett ML, Wahl SD, Lee YH, Orndorff PE, Parker W. Secretory IgA and mucin-mediated biofilm formation by environmental strains of Escherichia coli: role of type 1 pili. Mol Immunol. 2006 Feb;43(4):378-87

4-Randal Bollinger R, Barbas AS, Bush EL, Lin SS, Parker W. Biofilms in the large bowel suggest an apparent function of the human vermiform appendix. J Theor Biol. 2007 Dec 21;249(4):826-31.

5-Or is it the guinea pigs that are time-honored lab rats?

6-Randal Bollinger R, Barbas AS, Bush EL, Lin SS, Parker W. Biofilms in the large bowel suggest an apparent function of the human vermiform appendix. J Theor Biol. 2007 Dec 21;249(4):826-31.

7-For example, see??C Vons, C Barry and S Maitre, et al. Amoxicillin plus clavulanic acid versus appendicectomy for treatment of acute uncomplicated appendicitis: an open-label, non-inferiority, randomised controlled trial. Lancet,? 377? (2011), pp. 1573?1579.

8-There is a hint of Parker?s direction here, if you are curious; I am a rat and so are you and also in a great recent blog post by Robin (the wise) Smith.

Image credits:

1. Photo by Duke Medicine.

2. Map from WorldMapper (http://www.worldmapper.org/display.php?selected=231)

3. One of many amazing, amazing, Alex Wild images. This and other images of the relationship between Pseudomyrmex ants and Acacia trees can be found here: http://www.alexanderwild.com/Ants/Taxonomic-List-of-Ant-Genera/Pseudomyrmex/8709998_bQRJk8/3/575648446_WG23w#575653353_cfNBf

4. Ed Uthman, MD, at Wikimedia Commons and Flickr.

Source: http://rss.sciam.com/click.phdo?i=317aeda7ee735340f901ae238678e760

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